This is part of a series of puzzles where you must identify the name of a video game
In my books you must read
About a ship, clock and tree
One path is red, the other is blue
Which one you free is a choice made by you
Name the video game
I think the answer is:
Myst
In my books you must read
The books transport you to different ages
About a ship, clock and tree
Each of the different ages
One path is red, the other blue
Think this refers to the pages freeing the two brothers
Which one you free is a choice made by you
You can pick which brother you free!
Partial answer
The part about the red path and the blue path may be about the matrix. The video might be Enter the Matrix, though I don't know what the ship clock and tree or what the book part means.